rs28279709 SNP Detail

Summary

• ID
  rs28279709
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164118234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAATCCTTAA ATCCACGTGT CCTTAAATCT CTCTTGCTCC
  TCCTATTTCT CGACTGCTCC TCCTCCTTCT CGCTTGTCCC TGCCACTTCT CTGATTCAGG
  R
  ACAGGGACTT CTCTTTGTAC TCATGCCTTT CTTTTACGGA GAGGAGAGAG GAATCTGTTT
  CCTGCATGTG TGAGGTCATT TAAAGAAGAT CTTAACTATA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37518043	NES08870014	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs28279709					SNP	A	G	A	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37518043	NES08870014	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164118234 () rs orientation: forward

Symbol	Name	Function Class
D2Mit29	DNA segment, Chr 2, Massachusetts Institute of Technology 29	798 bp proximal
Svs4	seminal vesicle secretory protein 4	within coordinates
Tssr21549	transcription start site region 21549	356 bp downstream
Tssr21550	transcription start site region 21550	244 bp downstream
Tssr21551	transcription start site region 21551	788 bp upstream
Tssr21552	transcription start site region 21552	832 bp upstream
Tssr27409	transcription start site region 27409	318 bp upstream
Tssr27410	transcription start site region 27410	288 bp upstream
Tssr27411	transcription start site region 27411	263 bp upstream
Tssr27412	transcription start site region 27412	236 bp upstream
Tssr27413	transcription start site region 27413	221 bp upstream
Tssr27414	transcription start site region 27414	209 bp upstream
Tssr27415	transcription start site region 27415	190 bp upstream
Tssr27416	transcription start site region 27416	763 bp downstream
Tssr27417	transcription start site region 27417	772 bp downstream
Tssr27418	transcription start site region 27418	843 bp downstream
Tssr27419	transcription start site region 27419	853 bp downstream
Tssr27420	transcription start site region 27420	873 bp downstream
Tssr27421	transcription start site region 27421	897 bp downstream
Tssr27422	transcription start site region 27422	915 bp downstream
Tssr27423	transcription start site region 27423	953 bp downstream
Tssr27424	transcription start site region 27424	983 bp downstream
Tssr27425	transcription start site region 27425	1004 bp downstream
Tssr27426	transcription start site region 27426	1262 bp downstream
Tssr27427	transcription start site region 27427	1940 bp downstream
Tssr27428	transcription start site region 27428	1986 bp downstream