rs28279711 SNP Detail

Summary

• ID
  rs28279711
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164118205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATGCTGAA GACATCATGG
  GCTCTGTTCT GGCGATATGG CTCCTAGGGA AAGAAAGAGA ACGAGAATAA CCCGCAGGGT
  GGAGACCGTG GGGAGTGACT GCGCCCGTGC GAGGAACCCA CGTGCCCTTA AATCCTTAAA
  TCCACGTGTC CTTAAATCTC TCTTGCTCCT CCTATTTCTC GACTGCTCCT CCTCCTTCTC
  R
  CTTGTCCCTG CCACTTCTCT GATTCAGGAA CAGGGACTTC TCTTTGTACT CATGCCTTTC
  TTTTACGGAG AGGAGAGAGG AATCTGTTTC CTGCATGTGT GAGGTCATTT AAAGAAGATC
  TTAACTATAA AACTTCCACC ATGATTAGAA ATTAGCCTTT GATAGCACTG GAAATGTAAT
  TGAGGAAAAT ATGTAATAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37518045	NES08870012	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28279711					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37518045	NES08870012	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164118205 () rs orientation: forward

Symbol	Name	Function Class
D2Mit29	DNA segment, Chr 2, Massachusetts Institute of Technology 29	827 bp proximal
Svs4	seminal vesicle secretory protein 4	within coordinates
Tssr21549	transcription start site region 21549	327 bp downstream
Tssr21550	transcription start site region 21550	215 bp downstream
Tssr21551	transcription start site region 21551	817 bp upstream
Tssr21552	transcription start site region 21552	861 bp upstream
Tssr27409	transcription start site region 27409	289 bp upstream
Tssr27410	transcription start site region 27410	259 bp upstream
Tssr27411	transcription start site region 27411	234 bp upstream
Tssr27412	transcription start site region 27412	207 bp upstream
Tssr27413	transcription start site region 27413	192 bp upstream
Tssr27414	transcription start site region 27414	180 bp upstream
Tssr27415	transcription start site region 27415	161 bp upstream
Tssr27416	transcription start site region 27416	792 bp downstream
Tssr27417	transcription start site region 27417	801 bp downstream
Tssr27418	transcription start site region 27418	872 bp downstream
Tssr27419	transcription start site region 27419	882 bp downstream
Tssr27420	transcription start site region 27420	902 bp downstream
Tssr27421	transcription start site region 27421	926 bp downstream
Tssr27422	transcription start site region 27422	944 bp downstream
Tssr27423	transcription start site region 27423	982 bp downstream
Tssr27424	transcription start site region 27424	1012 bp downstream
Tssr27425	transcription start site region 27425	1033 bp downstream
Tssr27426	transcription start site region 27426	1291 bp downstream
Tssr27427	transcription start site region 27427	1969 bp downstream