rs28279712 SNP Detail

Summary

• ID
  rs28279712
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164118187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTC TTGCTCCTCC TATTTCTCGA
  Y
  TGCTCCTCCT CCTTCTCGCT TGTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37518046	NES08870011	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	T	T	T	T	T	T		C	T	T		C
ss148221291	ENSMUSSNP3412766	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
ss320605185	CHEV_2_164102003	CHEVERUD	SCREENING_POP	f	SNP												C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs28279712					SNP	C	C	T	C	T	T	T	T	T	T	T	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37518046	NES08870011	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164118187 () rs orientation: forward

Symbol	Name	Function Class
D2Mit29	DNA segment, Chr 2, Massachusetts Institute of Technology 29	845 bp proximal
Svs4	seminal vesicle secretory protein 4	within coordinates
Tssr21549	transcription start site region 21549	309 bp downstream
Tssr21550	transcription start site region 21550	197 bp downstream
Tssr21551	transcription start site region 21551	835 bp upstream
Tssr21552	transcription start site region 21552	879 bp upstream
Tssr27409	transcription start site region 27409	271 bp upstream
Tssr27410	transcription start site region 27410	241 bp upstream
Tssr27411	transcription start site region 27411	216 bp upstream
Tssr27412	transcription start site region 27412	189 bp upstream
Tssr27413	transcription start site region 27413	174 bp upstream
Tssr27414	transcription start site region 27414	162 bp upstream
Tssr27415	transcription start site region 27415	143 bp upstream
Tssr27416	transcription start site region 27416	810 bp downstream
Tssr27417	transcription start site region 27417	819 bp downstream
Tssr27418	transcription start site region 27418	890 bp downstream
Tssr27419	transcription start site region 27419	900 bp downstream
Tssr27420	transcription start site region 27420	920 bp downstream
Tssr27421	transcription start site region 27421	944 bp downstream
Tssr27422	transcription start site region 27422	962 bp downstream
Tssr27423	transcription start site region 27423	1000 bp downstream
Tssr27424	transcription start site region 27424	1030 bp downstream
Tssr27425	transcription start site region 27425	1051 bp downstream
Tssr27426	transcription start site region 27426	1309 bp downstream
Tssr27427	transcription start site region 27427	1987 bp downstream