rs28279714 SNP Detail

Summary

• ID
  rs28279714
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164117784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCGAATGTG TTTTCTCTGA
  CATTTCCGGG GTTTGAAGCC CCACTAGCAA AAGGGTCAAG AGGAGATTGG GGTTAGTGGC
  ATCTTCAGGG ACTGACAGAG TCCCAGATCC TCGTGTTGAA TGCTCAGTTT CTATCCAGAA
  TTTTTTTTTA AATGTATTAA AGTCTTGTAT TATTATTCAC CATAGTGATA TATAAGAAGG
  Y
  CACCTCCTTA CGTTTTGGAA CTTAAAGTAC AGGAATCGCA CCCAGCCCCT TAATGTGGCA
  GAGCCAAGAG GTCTTGGGAA TCAAAAGTTA ATGATGCAAA TTGTTATCTC TTTATTGGAA
  AGAAAGCTCC AGAGTAAATG TTAGGTTTAA GAACCTCAAG ACAAACAAGC ATGGGAAGTA
  AATGCCATCC AGGGACTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37518048	NES08870009	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28279714					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37518048	NES08870009	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164117784 () rs orientation: forward

Symbol	Name	Function Class
D2Mit29	DNA segment, Chr 2, Massachusetts Institute of Technology 29	1248 bp proximal
Svs4	seminal vesicle secretory protein 4	92 bp downstream
Tssr21549	transcription start site region 21549	88 bp upstream
Tssr21550	transcription start site region 21550	194 bp upstream
Tssr21551	transcription start site region 21551	1238 bp upstream
Tssr21552	transcription start site region 21552	1282 bp upstream
Tssr27409	transcription start site region 27409	114 bp downstream
Tssr27410	transcription start site region 27410	137 bp downstream
Tssr27411	transcription start site region 27411	174 bp downstream
Tssr27412	transcription start site region 27412	212 bp downstream
Tssr27413	transcription start site region 27413	219 bp downstream
Tssr27414	transcription start site region 27414	237 bp downstream
Tssr27415	transcription start site region 27415	253 bp downstream
Tssr27416	transcription start site region 27416	1213 bp downstream
Tssr27417	transcription start site region 27417	1222 bp downstream
Tssr27418	transcription start site region 27418	1293 bp downstream
Tssr27419	transcription start site region 27419	1303 bp downstream
Tssr27420	transcription start site region 27420	1323 bp downstream
Tssr27421	transcription start site region 27421	1347 bp downstream
Tssr27422	transcription start site region 27422	1365 bp downstream
Tssr27423	transcription start site region 27423	1403 bp downstream
Tssr27424	transcription start site region 27424	1433 bp downstream
Tssr27425	transcription start site region 27425	1454 bp downstream
Tssr27426	transcription start site region 27426	1712 bp downstream