rs28280299 SNP Detail

Summary

• ID
  rs28280299
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:147825731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGAAGGTCC ATTTCAAGGA TGTCTCTGTC ACCTGAGTAG
  ATGCCTTCAG AAAACATTGT GAAGGTGTGT CTGAGATAGC CACAGTCTCA TCCTCATTTC
  R
  ACATCTCAAA ACAGAAGCTG GGGGATGCAA AGTCATCATG GAAGCTGGGC AGACAAAACA
  GGATAAAGGG AGAAATGGAC TCCTTAATGA GAGTGTTGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37494028	NES08929921	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	G		A	A	A	A
ss147908148	ENSMUSSNP5590376	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs28280299					SNP	A	A	G	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37494028	NES08929921	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147825731 () rs orientation: forward

Symbol	Name	Function Class
9030622O22Rik	RIKEN cDNA 9030622O22 gene	within coordinates
Rr374033	regulatory region 374033	165 bp upstream
Rr566833	regulatory region 566833	738 bp proximal
Rr566834	regulatory region 566834	1640 bp proximal