rs28280302 SNP Detail

Summary

• ID
  rs28280302
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:147825546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTGCTTA GGACTAAGAC
  ATGGTACAGG GCTAAAGAAC ACAGGCCATC AGGAGACTAC TGGCTGGAGG AATGGCAACG
  GATACATCTT TTGAAATGAA CTAAAAGCTC TAAGCTGAAA TGTTTTCAAC TACAACCACA
  TCAAGGAGTC TACTTGCTGT CTTTCTCTGG TCAAACCCAG TTTTCTGGAT AGATAATGAA
  M
  GGCATGTCCT GGGAGTCAGT CCCAGGGAGG TCACAGCAGG AAGCAACTGT GTTGTCATCC
  CAGTTTGCTG TCTGAGGGCA AGGATTGAAG GTCCATTTCA AGGATGTCTC TGTCACCTGA
  GTAGATGCCT TCAGAAAACA TTGTGAAGGT GTGTCTGAGA TAGCCACAGT CTCATCCTCA
  TTTCGACATC TCAAAACAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37494031	NES08929918	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs28280302					SNP	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37494031	NES08929918	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147825546 () rs orientation: forward

Symbol	Name	Function Class
9030622O22Rik	RIKEN cDNA 9030622O22 gene	within coordinates
Rr374033	regulatory region 374033	350 bp upstream
Rr566833	regulatory region 566833	923 bp proximal
Rr566834	regulatory region 566834	1825 bp proximal