rs28280376 SNP Detail

Summary

• ID
  rs28280376
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:147786294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAATCCTT CCTTGCTCTC
  CTCCCTGACA CTTAAGGTTG GGACAGGAGT GTGCCCCATG GACTCCCTGC ACAAATTTCT
  CAATCCTGTT TCTTAGCAAA TAGATGGTCT CTAGCAAAAC CACCCCCATT CTCATAGTTC
  ACGTTCCAAA GGTAACTCCA GCTCCAAGCT GCCCTGGCTT CACCTCTCGT GGAAGTTCTC
  M
  TAGGAAACAC TTATCGATCA GTGCTCGCTG GGACACTGGT ATTGACAATT TGCCTTTTCT
  CAGAAACACA CAGCAAAAAC ACCCTTTCAG ATGTAGGTTG AAACAACTTC CATTGCTCAA
  CATTAGCTTT TTTTCCTGGA AACAGCTGAT AGGAAAGGGA TGTTAACTAC TGATAAATTA
  TTTCCCAAGC CACTTTGAAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37494109	NES08930902	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28280376					SNP	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37494109	NES08930902	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147786294 () rs orientation: forward

Symbol	Name	Function Class
9030622O22Rik	RIKEN cDNA 9030622O22 gene	89 bp downstream
Rr566828	regulatory region 566828	1407 bp distal
Rr566829	regulatory region 566829	within coordinates