rs28280377 SNP Detail

Summary

• ID
  rs28280377
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:147786101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGATGTTCTT TAGGGAACAT TGGTCCAGGG CACTGACCAA
  TGCATTGACT GAAATGCATC CTTCAAGGAC TCAATGCAGA ACTTACCTCT TTCCAGAATC
  Y
  TTCCTTGCTC TCCTCCCTGA CACTTAAGGT TGGGACAGGA GTGTGCCCCA TGGACTCCCT
  GCACAAATTT CTCAATCCTG TTTCTTAGCA AATAGATGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37494110	NES08930901	PERLEGEN	MM_PANEL2	f	SNP	T			T	T	T	T	T	T	C
ss45334414	mCV24540207	ABI	CRAMUS_MOUSE	f	SNP		T	C			T
ss147906963	ENSMUSSNP6511827	ENSEMBL	ENSEMBL_Sanger	f	SNP			C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28280377					SNP	T	T	C	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37494110	NES08930901	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147786101 () rs orientation: forward

Symbol	Name	Function Class
9030622O22Rik	RIKEN cDNA 9030622O22 gene	282 bp downstream
Rr566828	regulatory region 566828	1214 bp distal
Rr566829	regulatory region 566829	113 bp proximal