rs28281465 SNP Detail

Summary

• ID
  rs28281465
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163310065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTCAAGA AAAGACTCTC
  ATGGCTATTG AACACCCCCT CCTAGGGTTG TTCTGTCTGT GAGCTGAAGA AAAGAGGCAG
  GGCCAAAGTC ATGGCGCTAT GTAATATGGC TGATTTGGCA TGGTGGTTGT ATGTAATACA
  GGCGGCTTTG CGTGCTGGCT GGCTTCCTGC ATCAGAGGGA AACATTTGCT CTCACTTCTA
  W
  ATTATCATAA TCTCCAAAGG TAAAAATCCC TTAGGCTGTG GCACTTGTCC TGTGGTCCTA
  TGAGGTCCCC AAACCCTATT GTGTCTCTAT CACCAGCCAG TGGGCAGGAA AGCCTCAGAA
  CAAGTGAGCA CTGAGTTGCT CTCTCAGCTT AACATTCATC AACTAATACA AGTCTGCTTC
  TCAGTTTTAT TCCTTCCTTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37521328	NES08883734	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T		T	T	T		A
ss320603321	CHEV_2_163293881	CHEVERUD	SCREENING_POP	f	SNP								T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs28281465					SNP	T	T	T	T	T	A	T	T	T	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37521328	NES08883734	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163310065 () rs orientation: forward

Symbol	Name	Function Class
Fitm2	fat storage-inducing transmembrane protein 2	mRNA-UTR
Rr569385	regulatory region 569385	973 bp distal