rs28283226 SNP Detail

Summary

• ID
  rs28283226
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153069034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGTGAGCCT ACATCAGACT GGAAGCACAG TTTGAGCACA
  GATTTGTAAA GCTGGGCCCT AGCCATCAAA ACGTGTACAG CTTGAGGAGC CTGAAAAGGG
  Y
  TCTCTTCCTG TCAGAACTGC ATGAAGAAGT CATCTATAAT CACCACCCAC CCCTAGACAC
  TAAAGGAGAG CCTTTGTATG GCCTGAGAAC AGTCACAAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37560260	NES08917261	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	T	C		T		C	C	T	T	C	T	C
ss45205269	mCV23160170	ABI	CRAMUS_MOUSE	f	SNP		C	T					C		T
ss147988255	ENSMUSSNP1905611	ENSEMBL	ENSEMBL_Sanger	f	SNP			T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28283226					SNP	C	C	T	C	C	T	C	C	T	T	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37560260	NES08917261	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153069034 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12481	CpG island 12481	1674 bp distal
Plagl2	pleiomorphic adenoma gene-like 2	655 bp downstream
Rr567583	regulatory region 567583	1183 bp distal
Rr567584	regulatory region 567584	866 bp proximal
Rr567585	regulatory region 567585	1461 bp proximal
Tspyl3	TSPY-like 3	1673 bp upstream
Tssr26888	transcription start site region 26888	1720 bp upstream
Tssr26889	transcription start site region 26889	1672 bp upstream