rs28283227 SNP Detail

Summary

• ID
  rs28283227
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153068651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTGGAAAGT ATAATTCTGC CTAAATGTTC CTGCCTTTCT
  CATCAAAAGA TACCACAGCT CCCTCATCTG AAACCCCTAG ACCTCTCATA TGACATCCAC
  Y
  ATCTAGAGTA TAAAGTAGAA AACTCTAACT GGGATTCTGA CCCACTGTGG TGGACAGTGG
  ACATTTATCA AGGGGGAGGG TGAAATAAAA GATCAGCCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37560261	NES08917260	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	C	T		C		T	T	C	T	C	T
ss45261945	mCV23160169	ABI	CRAMUS_MOUSE	f	SNP	T	T	C					T		C
ss147988251	ENSMUSSNP5276475	ENSEMBL	ENSEMBL_Sanger	f	SNP			C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28283227					SNP	T	T	C	T	T	C	T	T	C	C	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37560261	NES08917260	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153068651 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12481	CpG island 12481	1291 bp distal
Plagl2	pleiomorphic adenoma gene-like 2	1038 bp downstream
Rr567583	regulatory region 567583	800 bp distal
Rr567584	regulatory region 567584	1249 bp proximal
Rr567585	regulatory region 567585	1844 bp proximal
Tspyl3	TSPY-like 3	1290 bp upstream
Tssr26887	transcription start site region 26887	1679 bp upstream
Tssr26888	transcription start site region 26888	1337 bp upstream
Tssr26889	transcription start site region 26889	1289 bp upstream