rs28283228 SNP Detail

Summary

• ID
  rs28283228
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153068435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCCTCTCAC TCCCAAGCTG GTTTTGGTTA CTATTTTAAC
  TAAGCAAACT AGGACAGGGA CACTCTCCTT GTTTTGTTTC ATTTTAAAAG AGGTCCTCTC
  R
  TCAGGGCCTG TGTCTGGGAT AGCCCCAGAG CTAGGATGTA ACTGCCCCTG CACTCCACAA
  TCCAAGTGTG GCAACATTCC TGTAGTCTCA GCCCTCAAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37560262	NES08917259	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	G	A		G		A	A	G	G	A	G	A
ss45291810	mCV23160158	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					A		G
ss147988240	ENSMUSSNP3478286	ENSEMBL	ENSEMBL_Sanger	f	SNP			G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28283228					SNP	A	A	G	A	A	G	A	A	G	G	A	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37560262	NES08917259	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153068435 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12481	CpG island 12481	1075 bp distal
Plagl2	pleiomorphic adenoma gene-like 2	1254 bp downstream
Tspyl3	TSPY-like 3	1074 bp upstream
Tssr26887	transcription start site region 26887	1463 bp upstream
Tssr26888	transcription start site region 26888	1121 bp upstream
Tssr26889	transcription start site region 26889	1073 bp upstream