rs28283233 SNP Detail

Summary

• ID
  rs28283233
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153067708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTTTAGGGC TGGCAGATAG GACACGTGCA GTCTTGTCAG
  GATGTATTAT CCTGGCATAG GCAGAGGGCT TACCAGATTC AAACTGGGAA CTAAAGATAA
  R
  CGTAACTGTC AGGCAATGAA GCTGCTGGGA AAGCCCTAGA AAGATGAGAG GCCAGGAACA
  ATCTAAAGTT GCTCCATTGT ATTGACCTGT GAACATTTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37560267	NES08917384	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	G	A		G		A	A	G	G	A	G	A
ss45233333	mCV23160135	ABI	CRAMUS_MOUSE	f	SNP		A	G					A		G
ss147988216	ENSMUSSNP217553	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28283233					SNP	A	A	G	A	A	G	A	A	G	G	A	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37560267	NES08917384	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153067708 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12481	CpG island 12481	348 bp distal
Plagl2	pleiomorphic adenoma gene-like 2	1981 bp downstream
Tspyl3	TSPY-like 3	347 bp upstream
Tssr26887	transcription start site region 26887	736 bp upstream
Tssr26888	transcription start site region 26888	394 bp upstream
Tssr26889	transcription start site region 26889	346 bp upstream