rs28283234 SNP Detail

Summary

• ID
  rs28283234
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153067478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGCTAGAGT CACTCCACTG CAGGAGACAG GGAAGATGAG
  ACCACCTGAG TCAAACAGAA CTGGTTCCAG GTTAGAAGGG CAGGTGATGA AAAAAAAAAA
  W
  GCTGGGCTGG TATAGACTAG GAAAAGAGCA GGCATTAGGA GTCAGGCCCA ACTCAGCAGA
  TGTGGTTGTA ACCTTGCATC AAAGCCAGCA CAACACGGGA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37560268	NES08917383	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28283234					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37560268	NES08917383	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153067478 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12481	CpG island 12481	118 bp distal
Rr567583	regulatory region 567583	within coordinates
Tspyl3	TSPY-like 3	117 bp upstream
Tssr26887	transcription start site region 26887	506 bp upstream
Tssr26888	transcription start site region 26888	164 bp upstream
Tssr26889	transcription start site region 26889	116 bp upstream