rs28283238 SNP Detail

Summary

• ID
  rs28283238
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153065991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGAAGAGCT AGGCCTCCAA CAGGAGCTGG TCCTTGTGAA
  GCCTTGTCAG TCGTGGTGGC AAGTAAGTGA AAGGCCATGT TTTACATGTG GTCCAGGCCA
  M
  AGCCATGATG ACAGTATACA TCCATAACAT TGGGTGCCTG CTATAAGTAC AGTGGCGTAT
  GAGAAGTACA TGACATAGAA CAGCGTGAAG ATCACAGCC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37560272	NES08917379	PERLEGEN	MM_PANEL2	f	SNP	A		C	A	A	A	A		A	C	C	A
ss45286493	mCV23160122	ABI	CRAMUS_MOUSE	f	SNP	A	A	C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs28283238					SNP	A	A	C	A	A	A	A	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37560272	NES08917379	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153065991 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12481	CpG island 12481	919 bp proximal
Tspyl3	TSPY-like 3	within coordinates
Tssr26887	transcription start site region 26887	962 bp downstream
Tssr26888	transcription start site region 26888	1306 bp downstream
Tssr26889	transcription start site region 26889	1325 bp downstream