rs28283241 SNP Detail

Summary

• ID
  rs28283241
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153065609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGGC CAGGCATGGG TAGGGTACAA
  Y
  ACGGGTCTTC ACAAGCCAAC ACCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37560275	NES08917376	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C		C	C	T	T	C
ss45330762	mCV23159836	ABI	CRAMUS_MOUSE	f	SNP		C	T					T
ss147988157	ENSMUSSNP2362076	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs28283241					SNP	C	C	T	C	C	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37560275	NES08917376	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153065609 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12481	CpG island 12481	1301 bp proximal
Rr567581	regulatory region 567581	1676 bp distal
Rr567582	regulatory region 567582	1309 bp distal
Rr567583	regulatory region 567583	1742 bp proximal
Tspyl3	TSPY-like 3	within coordinates
Tssr26887	transcription start site region 26887	1344 bp downstream
Tssr26888	transcription start site region 26888	1688 bp downstream
Tssr26889	transcription start site region 26889	1707 bp downstream