rs28283990 SNP Detail

Summary

• ID
  rs28283990
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127546210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGCCAGGCC CAGTCCTTCT CTTCCTCCCT TCTTCCCTCC
  CTCCTTCCAT TGTCTTGGTA TCTCTTCACA GCAATAGAAT ACTATGACTT GGACTTAAAC
  Y
  ATCCCAGGAG TAGTTTTGAC AACATTTCAT AATAGAATCA ACAAAAAGAT GGCCAGATGC
  ATGGGCCAAC AATAACAAAG CGATAGACTC CACACTTCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37628123	NES09010048	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	C		C	C	T	C	T	C	T
ss45229596	mCV22278174	ABI	CRAMUS_MOUSE	f	SNP			T				T		C
ss147538587	ENSMUSSNP655721	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28283990					SNP	T	T	T	T	T	C	T	C	C	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37628123	NES09010048	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127546210 () rs orientation: forward

Symbol	Name	Function Class
D2Dcr72	DNA Segment, Chr 2, Derry C. Roopenian 72	1681 bp distal
Gm10765	predicted gene 10765	579 bp downstream
Mall	mal, T cell differentiation protein-like	100 bp downstream
Tssr20034	transcription start site region 20034	1869 bp downstream
Tssr26137	transcription start site region 26137	1195 bp downstream
Tssr26138	transcription start site region 26138	1377 bp downstream
Tssr26139	transcription start site region 26139	1456 bp downstream
Tssr26140	transcription start site region 26140	1479 bp downstream