rs28283991 SNP Detail

Summary

• ID
  rs28283991
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127545095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGATAGGAA AGAAACACTC
  AGCCAGGTTT CTGAGTGCTC AGCTGTGTGT CCTAGCACAT AAAACTGTTC CAAATGGCTC
  AGGATTCAGT CCTCTTTTCC AAAGTGCATC CTTCCCCTCT ATGAACTACT GGGAAGTGGT
  GGGTAGAGCA TAGGAGACAG CAAAGAGGTA CCAGAGGAGT CAAGGGCCTG GGCAGGCATC
  R
  ATGGTGCTCC AGAGAAGACT CGTTTTTGTT TTGTTTTCGA GAAAGGGTTT CTCTATGTAG
  CCCAAGCTGT CCTGGAACTC ACTCTGTAGA CCAGGCTAGC CTCAAACTCA GAGATCTGCC
  TGCCTCTGCC TCCTAACTAA TTACTGGGAT CAAAGACATG CACCATCACC ACCCAGCTCT
  AAGTCAGACT CTTAACAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37628124	NES09010121	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28283991					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37628124	NES09010121	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127545095 () rs orientation: forward

Symbol	Name	Function Class
D2Dcr72	DNA Segment, Chr 2, Derry C. Roopenian 72	566 bp distal
Gm10765	predicted gene 10765	within coordinates
Mall	mal, T cell differentiation protein-like	1215 bp downstream
Tssr20034	transcription start site region 20034	754 bp downstream