rs28284872 SNP Detail

Summary

• ID
  rs28284872
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:41496592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCTTAAAC TGGGTTTGGC
  ATTGTCCTAG GGAATCTACC TGAGGGGGGG GGTAGGTCAA TGATCAAACA AAGCCTTGAT
  CCTGCCCCTT TATCTTCCCT CTAGGCTTAT CTAGCATCAA AGACCCATGG TGGGTGTCTC
  TCTCTCTCTG ACAGAAGTAT GTGTACATAC ACATAGACAC AGGTTCTTGA ATTAAGGCAA
  Y
  GAGTCCGGCC TGCATGGCCC TGCAAGTCTA TCCACTAGAT ACATCTGGCC CCAGGTCTAG
  ATCCAAAGTT GAGACCAGCA TATATACAAA TATGTTAACG CAACGTTAGG AGTCTTTTCA
  CAGACAACTA GTTCAGGCTG AGCCCATCTC TTCTATGGAC TGCTTCCTTG TCAGCTGGCC
  AAACCAAACA TCTGTATCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37937799	NES09456778	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C	T		C	T	C	C		C
ss321092834	CHEV_4_41443625	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28284872					SNP	C	C	T	C	C	C	C	C	C	T	T	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37937799	NES09456778	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:41496592 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14157	CpG island 14157	797 bp proximal
Myorg	myogenesis regulating glycosidase (putative)	within coordinates
Rr590654	regulatory region 590654	1713 bp distal
Rr590655	regulatory region 590655	277 bp distal
Tssr41339	transcription start site region 41339	259 bp upstream
Tssr41340	transcription start site region 41340	1629 bp downstream