rs28284874 SNP Detail

Summary

• ID
  rs28284874
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:41495853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACATGTC TGTGCTTATT
  ATTAAATGAC CTCAGAGGTA GGTTTTATAT CACTCTTACA TAGGAAAAAC TGAGGCTCAG
  TGGGGTAAGC AGCAGCTTAT TCAAGGTCAC CCAGCTGACT GACAAACGAA GACTGCGAAT
  ATGGCTCCCG GAAGAATGCT TGCTTAGTAT TCAGCGCCCT GAGTTCTAGC TTCAACACTG
  Y
  CAAGAAGAAG AAACCAAAGA ATTGGCATTG GAGATGGGCA TCGGGGGAGC CCCGAAGCTC
  TCCCCAGGAC CTTTCACCCA GAGAACATTA AAGATTCGGG CACAGGCTCT GAGAGGGAAG
  CTGAGTTCTA CTTCATTCTC CACCTTCTCT GGCAAGCCTC CAAGTCAGGA AAAACTCACC
  CCACCATAGT TGGAGCTGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37937801	NES09456776	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28284874					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37937801	NES09456776	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:41495853 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14157	CpG island 14157	1536 bp proximal
Myorg	myogenesis regulating glycosidase (putative)	within coordinates
Tssr41339	transcription start site region 41339	466 bp downstream