rs28284877 SNP Detail

Summary

• ID
  rs28284877
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:41495269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCTCAGT GGCCATTTAG
  ACCCTACCTC CTGACTGCTG TACGTCACAC TCACCAACAC ACACACACAC ACACACACAC
  ACACACACAC ACACACACAC ACAAGAGAGC CTAAGACCAG TAAGCTGTGG TTACAAGGCT
  GCTGGAGGCC ATCTGGAGCA ATGCTAGGCT TCCCAGATCC GATGTACAGG GAGAGAGACA
  Y
  GTTTGGACTG CACAAGAGGT ACTGGCAGGG ACAGAGGACA GGGCAAGGCC AAAAGAGGCT
  GGAGAGATGG CTCAGCAGTT AAGAGCATTT GTTGCTTTTA CAGAGAACCT GGGTCCGGTT
  CCCAGCATCC ACATGGTGGC TCACAACCAT CCATAACGCT AGTTCCAGGG CATCTGATGC
  CCTTTCCTGA CCTCCACAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37937804	NES09456871	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	T	T	T	C		T	C	T		C
ss321092825	CHEV_4_41442302	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs28284877					SNP	T	T	C	T	T	T	T	T	T	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37937804	NES09456871	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:41495269 () rs orientation: forward

Symbol	Name	Function Class
Myorg	myogenesis regulating glycosidase (putative)	335 bp downstream
Tssr41339	transcription start site region 41339	1050 bp downstream