rs28284880 SNP Detail

Summary

• ID
  rs28284880
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:41494987 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTTCTGG TTTTTAGTTA
  ACCCATTGGG CACCCGGAGG GCCAAGAGAA GAGTCAATGC TTTTAGCAAG AGCACCCTGT
  GTGTCTTTGT TCAACAGCGG CCAGAGGATT GGAACGGCCA GTGCCCACCC TGGGTTTGGG
  GAAGAAGGGT CCTGGGTGCT CGGTGAGGAG AACCAGAAGA ACGCTTGCTC TGGCTCCAGA
  R
  ATGCTCTGCT CCCAAGTCAG GGGATGGTGG CTGAGAAAAC CCACTTGGCT AAAGCTCAAT
  CCATTCAAAC GCATTCCCAA GCCCCCTCAG TGGCCATTTA GACCCTACCT CCTGACTGCT
  GTACGTCACA CTCACCAACA CACACACACA CACACACACA CACACACACA CACACACACA
  CACAAGAGAG CCTAAGACCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37937807	NES09456868	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	A	A	A	G		A	A	G		G
ss321092822	CHEV_4_41442020	CHEVERUD	SCREENING_POP	f	SNP											G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28284880					SNP	A	A	G	A	A	A	A	A	A	G	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37937807	NES09456868	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:41494987 () rs orientation: forward

Symbol	Name	Function Class
Myorg	myogenesis regulating glycosidase (putative)	617 bp downstream
Rr590654	regulatory region 590654	108 bp distal
Rr590655	regulatory region 590655	745 bp proximal
Tssr41339	transcription start site region 41339	1332 bp downstream