rs28284881 SNP Detail

Summary

• ID
  rs28284881
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:41494968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGTCATCA TACCAAGCTT
  TTGTTCTGGT TTTTAGTTAA CCCATTGGGC ACCCGGAGGG CCAAGAGAAG AGTCAATGCT
  TTTAGCAAGA GCACCCTGTG TGTCTTTGTT CAACAGCGGC CAGAGGATTG GAACGGCCAG
  TGCCCACCCT GGGTTTGGGG AAGAAGGGTC CTGGGTGCTC GGTGAGGAGA ACCAGAAGAA
  Y
  GCTTGCTCTG GCTCCAGAAA TGCTCTGCTC CCAAGTCAGG GGATGGTGGC TGAGAAAACC
  CACTTGGCTA AAGCTCAATC CATTCAAACG CATTCCCAAG CCCCCTCAGT GGCCATTTAG
  ACCCTACCTC CTGACTGCTG TACGTCACAC TCACCAACAC ACACACACAC ACACACACAC
  ACACACACAC ACACACACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37937808	NES09456867	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28284881					SNP	C	C	T	C	C	C	C	C	C	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37937808	NES09456867	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:41494968 () rs orientation: forward

Symbol	Name	Function Class
Myorg	myogenesis regulating glycosidase (putative)	636 bp downstream
Rr590654	regulatory region 590654	89 bp distal
Rr590655	regulatory region 590655	764 bp proximal
Tssr41339	transcription start site region 41339	1351 bp downstream