rs28284882 SNP Detail

Summary

• ID
  rs28284882
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:41494878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTGTCAC AGATGTTTAT
  CCAGGGGCTC TGTTGTTCCT GGAATCCACC AGACTGTAAT GACTCCGTGC AAAGGGAACA
  GGTGCAAACT GGAGTCATCA TACCAAGCTT TTGTTCTGGT TTTTAGTTAA CCCATTGGGC
  ACCCGGAGGG CCAAGAGAAG AGTCAATGCT TTTAGCAAGA GCACCCTGTG TGTCTTTGTT
  Y
  AACAGCGGCC AGAGGATTGG AACGGCCAGT GCCCACCCTG GGTTTGGGGA AGAAGGGTCC
  TGGGTGCTCG GTGAGGAGAA CCAGAAGAAC GCTTGCTCTG GCTCCAGAAA TGCTCTGCTC
  CCAAGTCAGG GGATGGTGGC TGAGAAAACC CACTTGGCTA AAGCTCAATC CATTCAAACG
  CATTCCCAAG CCCCCTCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37937809	NES09456866	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C	T		C	T	C	C		C
ss321092821	CHEV_4_41441911	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28284882					SNP	C	C	T	C	C	C	C	C	C	T	T	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37937809	NES09456866	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:41494878 () rs orientation: forward

Symbol	Name	Function Class
Myorg	myogenesis regulating glycosidase (putative)	726 bp downstream
Rr590654	regulatory region 590654	within coordinates
Rr590655	regulatory region 590655	854 bp proximal
Tssr41339	transcription start site region 41339	1441 bp downstream