rs28284892 SNP Detail

Summary

• ID
  rs28284892
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:41493757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAGCCTTT GGCCTGACCT
  AATTCTCTGA GGGGCTGGAG GGTGGTGCCA GCTTCCTCCT GCTGCTTCCT TAAGGAGGCC
  ATGGTATAGG TAGGCAGGCA GAGCTCAGAC TGCTCCATAA CTCTCCCCTG CTCTGGATTG
  TGTAACCTGG AGTGGGAAAG CCAAAGAGCT GTCCAAAACC ACAGAGTCCC TGACCTCTAG
  M
  CTGGGAACAC ACAGGAACAG GGCTGTCCTC TGAGTCTTTT CGTATCCCCT CCAATGCTGC
  TTGGAGCAAG CTTGGGGCTT GCCACCTAAA GTTAAATAGC TCCCCTCTTA TCAAGCTGCT
  GGAGAGATCC TGGGGCTTGC TGAAGTAAAT GATTACCTTT AAGATAAAAA AAAAAAAAAA
  AAATCAGGCT GTGCCTTGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37937821	NES09456852	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	A	A	A	A	A	A	C		A	C	A		A
ss321092807	CHEV_4_41440790	CHEVERUD	SCREENING_POP	f	SNP											C				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs28284892					SNP	A	A	C	A	A	A	A	A	A	C	C	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37937821	NES09456852	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:41493757 () rs orientation: forward

Symbol	Name	Function Class
Myorg	myogenesis regulating glycosidase (putative)	1847 bp downstream
Rr590654	regulatory region 590654	within coordinates
Rr590655	regulatory region 590655	1975 bp proximal