rs28286841 SNP Detail

Summary

• ID
  rs28286841
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113880816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATTATTGC TACCCTTTTC
  TCCCAGCATA GATACCTTGC TAGAGAGAGT CAGGGAGGGG ACCTTCCCTG TGTCAGGTGA
  GGATTCGGGT TCACAGCAAA GTCAGTGAGT TGAGAATATA CGTAATCAGT GACCGTCCCC
  TAGCCCAAAC ACACCTGTGG TTCTTCCAGA AGCATACAGA GACAGCACTG CCTGGATGGC
  R
  ACATACATGG CAGGCACATT GAAGGTCTCA AACATGATCT GGGTCATCTT CTCACGGTTG
  GCCTTGGGGT TCAGCGGGGC TTCAGTGAGC AGGGTTGGGT GTTCCTCTGG GGCCACACGG
  AGCTCATTGT AGAATGTATG GTGCCAGATC TTCTCCATGT CATCCCAGTT GGTGATAATG
  CCATGTTCAA TGGGGTACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37667278	NES09035320	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28286841					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667278	NES09035320	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113880816 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Tssr602	transcription start site region 602	142 bp downstream
Tssr19435	transcription start site region 19435	1157 bp downstream
Tssr19436	transcription start site region 19436	753 bp downstream
Tssr19437	transcription start site region 19437	31 bp downstream
Tssr19438	transcription start site region 19438	33 bp upstream
Tssr19439	transcription start site region 19439	98 bp upstream
Tssr25670	transcription start site region 25670	1093 bp upstream
Tssr25671	transcription start site region 25671	1030 bp upstream
Tssr25672	transcription start site region 25672	1013 bp upstream
Tssr25673	transcription start site region 25673	982 bp upstream
Tssr25674	transcription start site region 25674	736 bp upstream
Tssr25675	transcription start site region 25675	704 bp upstream
Tssr25676	transcription start site region 25676	681 bp upstream
Tssr25677	transcription start site region 25677	656 bp upstream
Tssr25678	transcription start site region 25678	1 bp downstream
Tssr25679	transcription start site region 25679	10 bp downstream
Tssr25680	transcription start site region 25680	23 bp downstream
Tssr25681	transcription start site region 25681	70 bp downstream
Tssr25682	transcription start site region 25682	152 bp downstream
Tssr25683	transcription start site region 25683	159 bp downstream
Tssr25684	transcription start site region 25684	250 bp downstream
Tssr25685	transcription start site region 25685	620 bp downstream
Tssr25686	transcription start site region 25686	963 bp downstream
Tssr25687	transcription start site region 25687	1594 bp downstream
Tssr25688	transcription start site region 25688	1658 bp downstream
Tssr25689	transcription start site region 25689	1724 bp downstream
Tssr25690	transcription start site region 25690	1742 bp downstream
Tssr25691	transcription start site region 25691	1864 bp downstream