rs28286842 SNP Detail

Summary

• ID
  rs28286842
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113880752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAA TATACGTAAT CAGTGACCGT
  Y
  CCCTAGCCCA AACACACCTG TGGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37667279	NES09035319	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28286842					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667279	NES09035319	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113880752 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Tssr602	transcription start site region 602	206 bp downstream
Tssr19435	transcription start site region 19435	1093 bp downstream
Tssr19436	transcription start site region 19436	689 bp downstream
Tssr19437	transcription start site region 19437	14 bp upstream
Tssr19438	transcription start site region 19438	97 bp upstream
Tssr19439	transcription start site region 19439	162 bp upstream
Tssr25669	transcription start site region 25669	1967 bp upstream
Tssr25670	transcription start site region 25670	1029 bp upstream
Tssr25671	transcription start site region 25671	966 bp upstream
Tssr25672	transcription start site region 25672	949 bp upstream
Tssr25673	transcription start site region 25673	918 bp upstream
Tssr25674	transcription start site region 25674	672 bp upstream
Tssr25675	transcription start site region 25675	640 bp upstream
Tssr25676	transcription start site region 25676	617 bp upstream
Tssr25677	transcription start site region 25677	592 bp upstream
Tssr25678	transcription start site region 25678	65 bp downstream
Tssr25679	transcription start site region 25679	74 bp downstream
Tssr25680	transcription start site region 25680	87 bp downstream
Tssr25681	transcription start site region 25681	134 bp downstream
Tssr25682	transcription start site region 25682	216 bp downstream
Tssr25683	transcription start site region 25683	223 bp downstream
Tssr25684	transcription start site region 25684	314 bp downstream
Tssr25685	transcription start site region 25685	684 bp downstream
Tssr25686	transcription start site region 25686	1027 bp downstream
Tssr25687	transcription start site region 25687	1658 bp downstream
Tssr25688	transcription start site region 25688	1722 bp downstream
Tssr25689	transcription start site region 25689	1788 bp downstream
Tssr25690	transcription start site region 25690	1806 bp downstream
Tssr25691	transcription start site region 25691	1928 bp downstream