rs28286843 SNP Detail

Summary

• ID
  rs28286843
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113880750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGAG AATATACGTA ATCAGTGACC
  R
  TCCCCTAGCC CAAACACACC TGTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37667280	NES09035318	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	G	G		G	A	G	A		G	G	A	G		G
ss45270223	mCV22515953	ABI	CRAMUS_MOUSE	f	SNP		G						G		A
ss147245834	ENSMUSSNP3248148	ENSEMBL	ENSEMBL_Sanger	f	SNP			A							A
ss320462305	CHEV_2_113876005	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28286843					SNP	G	G	A	G	A	G	G	G	G	A	G	A	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667280	NES09035318	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113880750 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Tssr602	transcription start site region 602	208 bp downstream
Tssr19435	transcription start site region 19435	1091 bp downstream
Tssr19436	transcription start site region 19436	687 bp downstream
Tssr19437	transcription start site region 19437	16 bp upstream
Tssr19438	transcription start site region 19438	99 bp upstream
Tssr19439	transcription start site region 19439	164 bp upstream
Tssr25669	transcription start site region 25669	1965 bp upstream
Tssr25670	transcription start site region 25670	1027 bp upstream
Tssr25671	transcription start site region 25671	964 bp upstream
Tssr25672	transcription start site region 25672	947 bp upstream
Tssr25673	transcription start site region 25673	916 bp upstream
Tssr25674	transcription start site region 25674	670 bp upstream
Tssr25675	transcription start site region 25675	638 bp upstream
Tssr25676	transcription start site region 25676	615 bp upstream
Tssr25677	transcription start site region 25677	590 bp upstream
Tssr25678	transcription start site region 25678	67 bp downstream
Tssr25679	transcription start site region 25679	76 bp downstream
Tssr25680	transcription start site region 25680	89 bp downstream
Tssr25681	transcription start site region 25681	136 bp downstream
Tssr25682	transcription start site region 25682	218 bp downstream
Tssr25683	transcription start site region 25683	225 bp downstream
Tssr25684	transcription start site region 25684	316 bp downstream
Tssr25685	transcription start site region 25685	686 bp downstream
Tssr25686	transcription start site region 25686	1029 bp downstream
Tssr25687	transcription start site region 25687	1660 bp downstream
Tssr25688	transcription start site region 25688	1724 bp downstream
Tssr25689	transcription start site region 25689	1790 bp downstream
Tssr25690	transcription start site region 25690	1808 bp downstream
Tssr25691	transcription start site region 25691	1930 bp downstream