rs28286844 SNP Detail

Summary

• ID
  rs28286844
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113880737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAG TCAGTGAGTT GAGAATATAC
  K
  TAATCAGTGA CCGTCCCCTA GCCCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37667281	NES09035317	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	T	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28286844					SNP	G	G	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667281	NES09035317	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113880737 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Tssr602	transcription start site region 602	221 bp downstream
Tssr19435	transcription start site region 19435	1078 bp downstream
Tssr19436	transcription start site region 19436	674 bp downstream
Tssr19437	transcription start site region 19437	29 bp upstream
Tssr19438	transcription start site region 19438	112 bp upstream
Tssr19439	transcription start site region 19439	177 bp upstream
Tssr25669	transcription start site region 25669	1952 bp upstream
Tssr25670	transcription start site region 25670	1014 bp upstream
Tssr25671	transcription start site region 25671	951 bp upstream
Tssr25672	transcription start site region 25672	934 bp upstream
Tssr25673	transcription start site region 25673	903 bp upstream
Tssr25674	transcription start site region 25674	657 bp upstream
Tssr25675	transcription start site region 25675	625 bp upstream
Tssr25676	transcription start site region 25676	602 bp upstream
Tssr25677	transcription start site region 25677	577 bp upstream
Tssr25678	transcription start site region 25678	80 bp downstream
Tssr25679	transcription start site region 25679	89 bp downstream
Tssr25680	transcription start site region 25680	102 bp downstream
Tssr25681	transcription start site region 25681	149 bp downstream
Tssr25682	transcription start site region 25682	231 bp downstream
Tssr25683	transcription start site region 25683	238 bp downstream
Tssr25684	transcription start site region 25684	329 bp downstream
Tssr25685	transcription start site region 25685	699 bp downstream
Tssr25686	transcription start site region 25686	1042 bp downstream
Tssr25687	transcription start site region 25687	1673 bp downstream
Tssr25688	transcription start site region 25688	1737 bp downstream
Tssr25689	transcription start site region 25689	1803 bp downstream
Tssr25690	transcription start site region 25690	1821 bp downstream
Tssr25691	transcription start site region 25691	1943 bp downstream