rs28286845 SNP Detail

Summary

• ID
  rs28286845
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113880730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAC AGCAAAGTCA GTGAGTTGAG
  M
  ATATACGTAA TCAGTGACCG TCCCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37667282	NES09035316	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	A	C	A	A	A	C	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28286845					SNP	A	A	C	A	C	A	A	A	C	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667282	NES09035316	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113880730 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Tssr602	transcription start site region 602	228 bp downstream
Tssr19435	transcription start site region 19435	1071 bp downstream
Tssr19436	transcription start site region 19436	667 bp downstream
Tssr19437	transcription start site region 19437	36 bp upstream
Tssr19438	transcription start site region 19438	119 bp upstream
Tssr19439	transcription start site region 19439	184 bp upstream
Tssr25669	transcription start site region 25669	1945 bp upstream
Tssr25670	transcription start site region 25670	1007 bp upstream
Tssr25671	transcription start site region 25671	944 bp upstream
Tssr25672	transcription start site region 25672	927 bp upstream
Tssr25673	transcription start site region 25673	896 bp upstream
Tssr25674	transcription start site region 25674	650 bp upstream
Tssr25675	transcription start site region 25675	618 bp upstream
Tssr25676	transcription start site region 25676	595 bp upstream
Tssr25677	transcription start site region 25677	570 bp upstream
Tssr25678	transcription start site region 25678	87 bp downstream
Tssr25679	transcription start site region 25679	96 bp downstream
Tssr25680	transcription start site region 25680	109 bp downstream
Tssr25681	transcription start site region 25681	156 bp downstream
Tssr25682	transcription start site region 25682	238 bp downstream
Tssr25683	transcription start site region 25683	245 bp downstream
Tssr25684	transcription start site region 25684	336 bp downstream
Tssr25685	transcription start site region 25685	706 bp downstream
Tssr25686	transcription start site region 25686	1049 bp downstream
Tssr25687	transcription start site region 25687	1680 bp downstream
Tssr25688	transcription start site region 25688	1744 bp downstream
Tssr25689	transcription start site region 25689	1810 bp downstream
Tssr25690	transcription start site region 25690	1828 bp downstream
Tssr25691	transcription start site region 25691	1950 bp downstream