rs28286847 SNP Detail

Summary

• ID
  rs28286847
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113880686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGTGTCC TTGAATATGT
  CTACCCAGGG GCTGTGAACA CAGCATATCA CATATCTTAA ATAAGGAGAA GAGCTAACTC
  AACGGGTTAT TGGATCTCTT ACAGTAAATG TTCCTGAAAT TAGCCTCAGG GAATTATTGC
  TACCCTTTTC TCCCAGCATA GATACCTTGC TAGAGAGAGT CAGGGAGGGG ACCTTCCCTG
  W
  GTCAGGTGAG GATTCGGGTT CACAGCAAAG TCAGTGAGTT GAGAATATAC GTAATCAGTG
  ACCGTCCCCT AGCCCAAACA CACCTGTGGT TCTTCCAGAA GCATACAGAG ACAGCACTGC
  CTGGATGGCG ACATACATGG CAGGCACATT GAAGGTCTCA AACATGATCT GGGTCATCTT
  CTCACGGTTG GCCTTGGGGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37667284	NES09035314	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28286847					SNP	T	T	T	T	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667284	NES09035314	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113880686 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Tssr602	transcription start site region 602	272 bp downstream
Tssr19434	transcription start site region 19434	1997 bp downstream
Tssr19435	transcription start site region 19435	1027 bp downstream
Tssr19436	transcription start site region 19436	623 bp downstream
Tssr19437	transcription start site region 19437	80 bp upstream
Tssr19438	transcription start site region 19438	163 bp upstream
Tssr19439	transcription start site region 19439	228 bp upstream
Tssr25667	transcription start site region 25667	1991 bp upstream
Tssr25668	transcription start site region 25668	1964 bp upstream
Tssr25669	transcription start site region 25669	1901 bp upstream
Tssr25670	transcription start site region 25670	963 bp upstream
Tssr25671	transcription start site region 25671	900 bp upstream
Tssr25672	transcription start site region 25672	883 bp upstream
Tssr25673	transcription start site region 25673	852 bp upstream
Tssr25674	transcription start site region 25674	606 bp upstream
Tssr25675	transcription start site region 25675	574 bp upstream
Tssr25676	transcription start site region 25676	551 bp upstream
Tssr25677	transcription start site region 25677	526 bp upstream
Tssr25678	transcription start site region 25678	131 bp downstream
Tssr25679	transcription start site region 25679	140 bp downstream
Tssr25680	transcription start site region 25680	153 bp downstream
Tssr25681	transcription start site region 25681	200 bp downstream
Tssr25682	transcription start site region 25682	282 bp downstream
Tssr25683	transcription start site region 25683	289 bp downstream
Tssr25684	transcription start site region 25684	380 bp downstream
Tssr25685	transcription start site region 25685	750 bp downstream
Tssr25686	transcription start site region 25686	1093 bp downstream
Tssr25687	transcription start site region 25687	1724 bp downstream
Tssr25688	transcription start site region 25688	1788 bp downstream
Tssr25689	transcription start site region 25689	1854 bp downstream
Tssr25690	transcription start site region 25690	1872 bp downstream
Tssr25691	transcription start site region 25691	1994 bp downstream