rs28286848 SNP Detail

Summary

• ID
  rs28286848
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113880638 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGA ATTATTGCTA CCCTTTTCTC
  Y
  CAGCATAGAT ACCTTGCTAG AGAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37667285	NES09035313	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	T	C	C	C	T	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28286848					SNP	C	C	T	C	T	C	C	C	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667285	NES09035313	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113880638 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Tssr602	transcription start site region 602	320 bp downstream
Tssr19433	transcription start site region 19433	1993 bp downstream
Tssr19434	transcription start site region 19434	1949 bp downstream
Tssr19435	transcription start site region 19435	979 bp downstream
Tssr19436	transcription start site region 19436	575 bp downstream
Tssr19437	transcription start site region 19437	128 bp upstream
Tssr19438	transcription start site region 19438	211 bp upstream
Tssr19439	transcription start site region 19439	276 bp upstream
Tssr25666	transcription start site region 25666	1986 bp upstream
Tssr25667	transcription start site region 25667	1943 bp upstream
Tssr25668	transcription start site region 25668	1916 bp upstream
Tssr25669	transcription start site region 25669	1853 bp upstream
Tssr25670	transcription start site region 25670	915 bp upstream
Tssr25671	transcription start site region 25671	852 bp upstream
Tssr25672	transcription start site region 25672	835 bp upstream
Tssr25673	transcription start site region 25673	804 bp upstream
Tssr25674	transcription start site region 25674	558 bp upstream
Tssr25675	transcription start site region 25675	526 bp upstream
Tssr25676	transcription start site region 25676	503 bp upstream
Tssr25677	transcription start site region 25677	478 bp upstream
Tssr25678	transcription start site region 25678	179 bp downstream
Tssr25679	transcription start site region 25679	188 bp downstream
Tssr25680	transcription start site region 25680	201 bp downstream
Tssr25681	transcription start site region 25681	248 bp downstream
Tssr25682	transcription start site region 25682	330 bp downstream
Tssr25683	transcription start site region 25683	337 bp downstream
Tssr25684	transcription start site region 25684	428 bp downstream
Tssr25685	transcription start site region 25685	798 bp downstream
Tssr25686	transcription start site region 25686	1141 bp downstream
Tssr25687	transcription start site region 25687	1772 bp downstream
Tssr25688	transcription start site region 25688	1836 bp downstream
Tssr25689	transcription start site region 25689	1902 bp downstream
Tssr25690	transcription start site region 25690	1920 bp downstream