rs28286849 SNP Detail

Summary

• ID
  rs28286849
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113880608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTAC AGTAAATGTT CCTGAAATTA
  R
  CCTCAGGGAA TTATTGCTAC CCTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37667286	NES09035312	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	A	A	A	G	A	G	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28286849					SNP	G	G	A	G	A	A	A	G	A	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667286	NES09035312	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113880608 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Tssr602	transcription start site region 602	350 bp downstream
Tssr19433	transcription start site region 19433	1963 bp downstream
Tssr19434	transcription start site region 19434	1919 bp downstream
Tssr19435	transcription start site region 19435	949 bp downstream
Tssr19436	transcription start site region 19436	545 bp downstream
Tssr19437	transcription start site region 19437	158 bp upstream
Tssr19438	transcription start site region 19438	241 bp upstream
Tssr19439	transcription start site region 19439	306 bp upstream
Tssr25666	transcription start site region 25666	1956 bp upstream
Tssr25667	transcription start site region 25667	1913 bp upstream
Tssr25668	transcription start site region 25668	1886 bp upstream
Tssr25669	transcription start site region 25669	1823 bp upstream
Tssr25670	transcription start site region 25670	885 bp upstream
Tssr25671	transcription start site region 25671	822 bp upstream
Tssr25672	transcription start site region 25672	805 bp upstream
Tssr25673	transcription start site region 25673	774 bp upstream
Tssr25674	transcription start site region 25674	528 bp upstream
Tssr25675	transcription start site region 25675	496 bp upstream
Tssr25676	transcription start site region 25676	473 bp upstream
Tssr25677	transcription start site region 25677	448 bp upstream
Tssr25678	transcription start site region 25678	209 bp downstream
Tssr25679	transcription start site region 25679	218 bp downstream
Tssr25680	transcription start site region 25680	231 bp downstream
Tssr25681	transcription start site region 25681	278 bp downstream
Tssr25682	transcription start site region 25682	360 bp downstream
Tssr25683	transcription start site region 25683	367 bp downstream
Tssr25684	transcription start site region 25684	458 bp downstream
Tssr25685	transcription start site region 25685	828 bp downstream
Tssr25686	transcription start site region 25686	1171 bp downstream
Tssr25687	transcription start site region 25687	1802 bp downstream
Tssr25688	transcription start site region 25688	1866 bp downstream
Tssr25689	transcription start site region 25689	1932 bp downstream
Tssr25690	transcription start site region 25690	1950 bp downstream