rs28286850 SNP Detail

Summary

• ID
  rs28286850
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113880568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAAT AAGGAGAAGA GCTAACTCAA
  Y
  GGGTTATTGG ATCTCTTACA GTAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37667287	NES09035311	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	C	C		C	T	C	T		T	C	T	T		C
ss45365741	mCV22515952	ABI	CRAMUS_MOUSE	f	SNP		C						C		T
ss147245827	ENSMUSSNP5330962	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
ss320462304	CHEV_2_113875823	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28286850					SNP	C	C	T	C	T	C	C	C	C	T	C	T	C	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667287	NES09035311	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113880568 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Tssr602	transcription start site region 602	390 bp downstream
Tssr19433	transcription start site region 19433	1923 bp downstream
Tssr19434	transcription start site region 19434	1879 bp downstream
Tssr19435	transcription start site region 19435	909 bp downstream
Tssr19436	transcription start site region 19436	505 bp downstream
Tssr19437	transcription start site region 19437	198 bp upstream
Tssr19438	transcription start site region 19438	281 bp upstream
Tssr19439	transcription start site region 19439	346 bp upstream
Tssr25666	transcription start site region 25666	1916 bp upstream
Tssr25667	transcription start site region 25667	1873 bp upstream
Tssr25668	transcription start site region 25668	1846 bp upstream
Tssr25669	transcription start site region 25669	1783 bp upstream
Tssr25670	transcription start site region 25670	845 bp upstream
Tssr25671	transcription start site region 25671	782 bp upstream
Tssr25672	transcription start site region 25672	765 bp upstream
Tssr25673	transcription start site region 25673	734 bp upstream
Tssr25674	transcription start site region 25674	488 bp upstream
Tssr25675	transcription start site region 25675	456 bp upstream
Tssr25676	transcription start site region 25676	433 bp upstream
Tssr25677	transcription start site region 25677	408 bp upstream
Tssr25678	transcription start site region 25678	249 bp downstream
Tssr25679	transcription start site region 25679	258 bp downstream
Tssr25680	transcription start site region 25680	271 bp downstream
Tssr25681	transcription start site region 25681	318 bp downstream
Tssr25682	transcription start site region 25682	400 bp downstream
Tssr25683	transcription start site region 25683	407 bp downstream
Tssr25684	transcription start site region 25684	498 bp downstream
Tssr25685	transcription start site region 25685	868 bp downstream
Tssr25686	transcription start site region 25686	1211 bp downstream
Tssr25687	transcription start site region 25687	1842 bp downstream
Tssr25688	transcription start site region 25688	1906 bp downstream
Tssr25689	transcription start site region 25689	1972 bp downstream
Tssr25690	transcription start site region 25690	1990 bp downstream