rs28286852 SNP Detail

Summary

• ID
  rs28286852
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113880418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAGC ATGTTATATA AGCATCCATG
  M
  GTGTTTTTCT TGGGGCCAAT CCAAC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37667289	NES09035309	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28286852					SNP	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667289	NES09035309	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113880418 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Tssr602	transcription start site region 602	540 bp downstream
Tssr19433	transcription start site region 19433	1773 bp downstream
Tssr19434	transcription start site region 19434	1729 bp downstream
Tssr19435	transcription start site region 19435	759 bp downstream
Tssr19436	transcription start site region 19436	355 bp downstream
Tssr19437	transcription start site region 19437	348 bp upstream
Tssr19438	transcription start site region 19438	431 bp upstream
Tssr19439	transcription start site region 19439	496 bp upstream
Tssr25666	transcription start site region 25666	1766 bp upstream
Tssr25667	transcription start site region 25667	1723 bp upstream
Tssr25668	transcription start site region 25668	1696 bp upstream
Tssr25669	transcription start site region 25669	1633 bp upstream
Tssr25670	transcription start site region 25670	695 bp upstream
Tssr25671	transcription start site region 25671	632 bp upstream
Tssr25672	transcription start site region 25672	615 bp upstream
Tssr25673	transcription start site region 25673	584 bp upstream
Tssr25674	transcription start site region 25674	338 bp upstream
Tssr25675	transcription start site region 25675	306 bp upstream
Tssr25676	transcription start site region 25676	283 bp upstream
Tssr25677	transcription start site region 25677	258 bp upstream
Tssr25678	transcription start site region 25678	399 bp downstream
Tssr25679	transcription start site region 25679	408 bp downstream
Tssr25680	transcription start site region 25680	421 bp downstream
Tssr25681	transcription start site region 25681	468 bp downstream
Tssr25682	transcription start site region 25682	550 bp downstream
Tssr25683	transcription start site region 25683	557 bp downstream
Tssr25684	transcription start site region 25684	648 bp downstream
Tssr25685	transcription start site region 25685	1018 bp downstream
Tssr25686	transcription start site region 25686	1361 bp downstream
Tssr25687	transcription start site region 25687	1992 bp downstream