rs28286853 SNP Detail

Summary

• ID
  rs28286853
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113880416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATTA GCATGTTATA TAAGCATCCA
  Y
  GAGTGTTTTT CTTGGGGCCA ATCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37667290	NES09035308	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28286853					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667290	NES09035308	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113880416 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Tssr602	transcription start site region 602	542 bp downstream
Tssr19433	transcription start site region 19433	1771 bp downstream
Tssr19434	transcription start site region 19434	1727 bp downstream
Tssr19435	transcription start site region 19435	757 bp downstream
Tssr19436	transcription start site region 19436	353 bp downstream
Tssr19437	transcription start site region 19437	350 bp upstream
Tssr19438	transcription start site region 19438	433 bp upstream
Tssr19439	transcription start site region 19439	498 bp upstream
Tssr25666	transcription start site region 25666	1764 bp upstream
Tssr25667	transcription start site region 25667	1721 bp upstream
Tssr25668	transcription start site region 25668	1694 bp upstream
Tssr25669	transcription start site region 25669	1631 bp upstream
Tssr25670	transcription start site region 25670	693 bp upstream
Tssr25671	transcription start site region 25671	630 bp upstream
Tssr25672	transcription start site region 25672	613 bp upstream
Tssr25673	transcription start site region 25673	582 bp upstream
Tssr25674	transcription start site region 25674	336 bp upstream
Tssr25675	transcription start site region 25675	304 bp upstream
Tssr25676	transcription start site region 25676	281 bp upstream
Tssr25677	transcription start site region 25677	256 bp upstream
Tssr25678	transcription start site region 25678	401 bp downstream
Tssr25679	transcription start site region 25679	410 bp downstream
Tssr25680	transcription start site region 25680	423 bp downstream
Tssr25681	transcription start site region 25681	470 bp downstream
Tssr25682	transcription start site region 25682	552 bp downstream
Tssr25683	transcription start site region 25683	559 bp downstream
Tssr25684	transcription start site region 25684	650 bp downstream
Tssr25685	transcription start site region 25685	1020 bp downstream
Tssr25686	transcription start site region 25686	1363 bp downstream
Tssr25687	transcription start site region 25687	1994 bp downstream