rs28286857 SNP Detail

Summary

• ID
  rs28286857
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113880219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCG AACCACTGCT TCAGCCATAG
  W
  GAAACCGGCT TCTGCCTAGG TATGG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37667294	NES09035304	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28286857					SNP	A	A	A	A	A	T	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667294	NES09035304	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113880219 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Rr562816	regulatory region 562816	1929 bp distal
Tssr602	transcription start site region 602	739 bp downstream
Tssr19433	transcription start site region 19433	1574 bp downstream
Tssr19434	transcription start site region 19434	1530 bp downstream
Tssr19435	transcription start site region 19435	560 bp downstream
Tssr19436	transcription start site region 19436	156 bp downstream
Tssr19437	transcription start site region 19437	547 bp upstream
Tssr19438	transcription start site region 19438	630 bp upstream
Tssr19439	transcription start site region 19439	695 bp upstream
Tssr25666	transcription start site region 25666	1567 bp upstream
Tssr25667	transcription start site region 25667	1524 bp upstream
Tssr25668	transcription start site region 25668	1497 bp upstream
Tssr25669	transcription start site region 25669	1434 bp upstream
Tssr25670	transcription start site region 25670	496 bp upstream
Tssr25671	transcription start site region 25671	433 bp upstream
Tssr25672	transcription start site region 25672	416 bp upstream
Tssr25673	transcription start site region 25673	385 bp upstream
Tssr25674	transcription start site region 25674	139 bp upstream
Tssr25675	transcription start site region 25675	107 bp upstream
Tssr25676	transcription start site region 25676	84 bp upstream
Tssr25677	transcription start site region 25677	59 bp upstream
Tssr25678	transcription start site region 25678	598 bp downstream
Tssr25679	transcription start site region 25679	607 bp downstream
Tssr25680	transcription start site region 25680	620 bp downstream
Tssr25681	transcription start site region 25681	667 bp downstream
Tssr25682	transcription start site region 25682	749 bp downstream
Tssr25683	transcription start site region 25683	756 bp downstream
Tssr25684	transcription start site region 25684	847 bp downstream
Tssr25685	transcription start site region 25685	1217 bp downstream
Tssr25686	transcription start site region 25686	1560 bp downstream