rs28286858 SNP Detail

Summary

• ID
  rs28286858
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113880196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAT AGATAAGAGG GTGAAGCACT
  K
  CGAACCACTG CTTCAGCCAT AGAGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37667295	NES09035302	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	G	G		G	G	G		G	G	G	G		T
ss45280116	mCV22515951	ABI	CRAMUS_MOUSE	f	SNP		T						T	G
ss147245823	ENSMUSSNP2678365	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							G
ss320462303	CHEV_2_113875451	CHEVERUD	SCREENING_POP	f	SNP												T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28286858					SNP	T	T	G	G	G	G	G	T	G	G	G	T	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667295	NES09035302	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113880196 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Rr562816	regulatory region 562816	1906 bp distal
Tssr602	transcription start site region 602	762 bp downstream
Tssr19433	transcription start site region 19433	1551 bp downstream
Tssr19434	transcription start site region 19434	1507 bp downstream
Tssr19435	transcription start site region 19435	537 bp downstream
Tssr19436	transcription start site region 19436	133 bp downstream
Tssr19437	transcription start site region 19437	570 bp upstream
Tssr19438	transcription start site region 19438	653 bp upstream
Tssr19439	transcription start site region 19439	718 bp upstream
Tssr25666	transcription start site region 25666	1544 bp upstream
Tssr25667	transcription start site region 25667	1501 bp upstream
Tssr25668	transcription start site region 25668	1474 bp upstream
Tssr25669	transcription start site region 25669	1411 bp upstream
Tssr25670	transcription start site region 25670	473 bp upstream
Tssr25671	transcription start site region 25671	410 bp upstream
Tssr25672	transcription start site region 25672	393 bp upstream
Tssr25673	transcription start site region 25673	362 bp upstream
Tssr25674	transcription start site region 25674	116 bp upstream
Tssr25675	transcription start site region 25675	84 bp upstream
Tssr25676	transcription start site region 25676	61 bp upstream
Tssr25677	transcription start site region 25677	36 bp upstream
Tssr25678	transcription start site region 25678	621 bp downstream
Tssr25679	transcription start site region 25679	630 bp downstream
Tssr25680	transcription start site region 25680	643 bp downstream
Tssr25681	transcription start site region 25681	690 bp downstream
Tssr25682	transcription start site region 25682	772 bp downstream
Tssr25683	transcription start site region 25683	779 bp downstream
Tssr25684	transcription start site region 25684	870 bp downstream
Tssr25685	transcription start site region 25685	1240 bp downstream
Tssr25686	transcription start site region 25686	1583 bp downstream