rs28286859 SNP Detail

Summary

• ID
  rs28286859
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113879777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGGGTAT TACTCTGGGT
  GATTGCAGAA TTTCTAGAGA AGCTGAGGCT CAGCACCAAA AGCCATCCCT TACCAATGAA
  AGAGGGCTGG AAGAGAGTCT CTGGACAGCG GAAGCGCTCG TTGCCAATGG TGATGACCTG
  GCCGTCAGGA AGTTCATAGC TCTTCTCCAG AGAGGAGGAA GATGCAGCTG TGGCCATCTC
  R
  TTCTCAAAAT CCAGGGCGAC GTAACACAGT TTTTCTTTTA TGTCACGGAC AATTTCACGT
  TCAGCTGCAG AGACAGAGGG CTTCATAGTC AAGCTCTGAA GAAAGGATCA AATATGGGGA
  AGTAGGTCTA TCTACCAATG AAGCAAAAGC AACAGGCATA TGCTGTGTCA GATAACACAC
  ACACACACAC ACACACACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37667296	NES09035300	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28286859					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667296	NES09035300	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113879777 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Tssr600	transcription start site region 600	1727 bp upstream
Tssr601	transcription start site region 601	1716 bp upstream
Tssr602	transcription start site region 602	1181 bp downstream
Tssr19429	transcription start site region 19429	1999 bp downstream
Tssr19430	transcription start site region 19430	1889 bp downstream
Tssr19431	transcription start site region 19431	1805 bp downstream
Tssr19432	transcription start site region 19432	1722 bp downstream
Tssr19433	transcription start site region 19433	1132 bp downstream
Tssr19434	transcription start site region 19434	1088 bp downstream
Tssr19435	transcription start site region 19435	118 bp downstream
Tssr19436	transcription start site region 19436	254 bp upstream
Tssr19437	transcription start site region 19437	989 bp upstream
Tssr19438	transcription start site region 19438	1072 bp upstream
Tssr19439	transcription start site region 19439	1137 bp upstream
Tssr25660	transcription start site region 25660	1978 bp upstream
Tssr25661	transcription start site region 25661	1957 bp upstream
Tssr25662	transcription start site region 25662	1854 bp upstream
Tssr25663	transcription start site region 25663	1828 bp upstream
Tssr25664	transcription start site region 25664	1787 bp upstream
Tssr25665	transcription start site region 25665	1679 bp upstream
Tssr25666	transcription start site region 25666	1125 bp upstream
Tssr25667	transcription start site region 25667	1082 bp upstream
Tssr25668	transcription start site region 25668	1055 bp upstream
Tssr25669	transcription start site region 25669	992 bp upstream
Tssr25670	transcription start site region 25670	54 bp upstream
Tssr25671	transcription start site region 25671	within coordinates
Tssr25672	transcription start site region 25672	17 bp downstream
Tssr25673	transcription start site region 25673	52 bp downstream
Tssr25674	transcription start site region 25674	256 bp downstream
Tssr25675	transcription start site region 25675	304 bp downstream
Tssr25676	transcription start site region 25676	341 bp downstream
Tssr25677	transcription start site region 25677	368 bp downstream
Tssr25678	transcription start site region 25678	1040 bp downstream
Tssr25679	transcription start site region 25679	1049 bp downstream
Tssr25680	transcription start site region 25680	1062 bp downstream
Tssr25681	transcription start site region 25681	1109 bp downstream
Tssr25682	transcription start site region 25682	1191 bp downstream
Tssr25683	transcription start site region 25683	1198 bp downstream
Tssr25684	transcription start site region 25684	1289 bp downstream
Tssr25685	transcription start site region 25685	1659 bp downstream