rs28286860 SNP Detail

Summary

• ID
  rs28286860
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113879759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCATGCT TCTAAGTGAA
  ATGGGTATTA CTCTGGGTGA TTGCAGAATT TCTAGAGAAG CTGAGGCTCA GCACCAAAAG
  CCATCCCTTA CCAATGAAAG AGGGCTGGAA GAGAGTCTCT GGACAGCGGA AGCGCTCGTT
  GCCAATGGTG ATGACCTGGC CGTCAGGAAG TTCATAGCTC TTCTCCAGAG AGGAGGAAGA
  Y
  GCAGCTGTGG CCATCTCGTT CTCAAAATCC AGGGCGACGT AACACAGTTT TTCTTTTATG
  TCACGGACAA TTTCACGTTC AGCTGCAGAG ACAGAGGGCT TCATAGTCAA GCTCTGAAGA
  AAGGATCAAA TATGGGGAAG TAGGTCTATC TACCAATGAA GCAAAAGCAA CAGGCATATG
  CTGTGTCAGA TAACACACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37667297	NES09035298	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28286860					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667297	NES09035298	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113879759 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Rr562816	regulatory region 562816	1469 bp distal
Tssr600	transcription start site region 600	1709 bp upstream
Tssr601	transcription start site region 601	1698 bp upstream
Tssr602	transcription start site region 602	1199 bp downstream
Tssr19429	transcription start site region 19429	1981 bp downstream
Tssr19430	transcription start site region 19430	1871 bp downstream
Tssr19431	transcription start site region 19431	1787 bp downstream
Tssr19432	transcription start site region 19432	1704 bp downstream
Tssr19433	transcription start site region 19433	1114 bp downstream
Tssr19434	transcription start site region 19434	1070 bp downstream
Tssr19435	transcription start site region 19435	100 bp downstream
Tssr19436	transcription start site region 19436	272 bp upstream
Tssr19437	transcription start site region 19437	1007 bp upstream
Tssr19438	transcription start site region 19438	1090 bp upstream
Tssr19439	transcription start site region 19439	1155 bp upstream
Tssr25660	transcription start site region 25660	1960 bp upstream
Tssr25661	transcription start site region 25661	1939 bp upstream
Tssr25662	transcription start site region 25662	1836 bp upstream
Tssr25663	transcription start site region 25663	1810 bp upstream
Tssr25664	transcription start site region 25664	1769 bp upstream
Tssr25665	transcription start site region 25665	1661 bp upstream
Tssr25666	transcription start site region 25666	1107 bp upstream
Tssr25667	transcription start site region 25667	1064 bp upstream
Tssr25668	transcription start site region 25668	1037 bp upstream
Tssr25669	transcription start site region 25669	974 bp upstream
Tssr25670	transcription start site region 25670	36 bp upstream
Tssr25671	transcription start site region 25671	within coordinates
Tssr25672	transcription start site region 25672	35 bp downstream
Tssr25673	transcription start site region 25673	70 bp downstream
Tssr25674	transcription start site region 25674	274 bp downstream
Tssr25675	transcription start site region 25675	322 bp downstream
Tssr25676	transcription start site region 25676	359 bp downstream
Tssr25677	transcription start site region 25677	386 bp downstream
Tssr25678	transcription start site region 25678	1058 bp downstream
Tssr25679	transcription start site region 25679	1067 bp downstream
Tssr25680	transcription start site region 25680	1080 bp downstream
Tssr25681	transcription start site region 25681	1127 bp downstream
Tssr25682	transcription start site region 25682	1209 bp downstream
Tssr25683	transcription start site region 25683	1216 bp downstream
Tssr25684	transcription start site region 25684	1307 bp downstream
Tssr25685	transcription start site region 25685	1677 bp downstream