rs28286861 SNP Detail

Summary

• ID
  rs28286861
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113879687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTTTCTCC TTACTGAGGT
  ATCAGGAGGT GAGACTGAGC TGAGTAAGAT GGCAGATGCT GACTCGAGAC CCCTGCCATG
  CTTCTAAGTG AAATGGGTAT TACTCTGGGT GATTGCAGAA TTTCTAGAGA AGCTGAGGCT
  CAGCACCAAA AGCCATCCCT TACCAATGAA AGAGGGCTGG AAGAGAGTCT CTGGACAGCG
  R
  AAGCGCTCGT TGCCAATGGT GATGACCTGG CCGTCAGGAA GTTCATAGCT CTTCTCCAGA
  GAGGAGGAAG ATGCAGCTGT GGCCATCTCG TTCTCAAAAT CCAGGGCGAC GTAACACAGT
  TTTTCTTTTA TGTCACGGAC AATTTCACGT TCAGCTGCAG AGACAGAGGG CTTCATAGTC
  AAGCTCTGAA GAAAGGATCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37667298	NES09035296	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28286861					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667298	NES09035296	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113879687 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Rr562816	regulatory region 562816	1397 bp distal
Tssr600	transcription start site region 600	1637 bp upstream
Tssr601	transcription start site region 601	1626 bp upstream
Tssr602	transcription start site region 602	1271 bp downstream
Tssr19429	transcription start site region 19429	1909 bp downstream
Tssr19430	transcription start site region 19430	1799 bp downstream
Tssr19431	transcription start site region 19431	1715 bp downstream
Tssr19432	transcription start site region 19432	1632 bp downstream
Tssr19433	transcription start site region 19433	1042 bp downstream
Tssr19434	transcription start site region 19434	998 bp downstream
Tssr19435	transcription start site region 19435	28 bp downstream
Tssr19436	transcription start site region 19436	344 bp upstream
Tssr19437	transcription start site region 19437	1079 bp upstream
Tssr19438	transcription start site region 19438	1162 bp upstream
Tssr19439	transcription start site region 19439	1227 bp upstream
Tssr25660	transcription start site region 25660	1888 bp upstream
Tssr25661	transcription start site region 25661	1867 bp upstream
Tssr25662	transcription start site region 25662	1764 bp upstream
Tssr25663	transcription start site region 25663	1738 bp upstream
Tssr25664	transcription start site region 25664	1697 bp upstream
Tssr25665	transcription start site region 25665	1589 bp upstream
Tssr25666	transcription start site region 25666	1035 bp upstream
Tssr25667	transcription start site region 25667	992 bp upstream
Tssr25668	transcription start site region 25668	965 bp upstream
Tssr25669	transcription start site region 25669	902 bp upstream
Tssr25670	transcription start site region 25670	within coordinates
Tssr25671	transcription start site region 25671	38 bp downstream
Tssr25672	transcription start site region 25672	107 bp downstream
Tssr25673	transcription start site region 25673	142 bp downstream
Tssr25674	transcription start site region 25674	346 bp downstream
Tssr25675	transcription start site region 25675	394 bp downstream
Tssr25676	transcription start site region 25676	431 bp downstream
Tssr25677	transcription start site region 25677	458 bp downstream
Tssr25678	transcription start site region 25678	1130 bp downstream
Tssr25679	transcription start site region 25679	1139 bp downstream
Tssr25680	transcription start site region 25680	1152 bp downstream
Tssr25681	transcription start site region 25681	1199 bp downstream
Tssr25682	transcription start site region 25682	1281 bp downstream
Tssr25683	transcription start site region 25683	1288 bp downstream
Tssr25684	transcription start site region 25684	1379 bp downstream
Tssr25685	transcription start site region 25685	1749 bp downstream