rs28286862 SNP Detail

Summary

• ID
  rs28286862
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113879599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAA ATGGGTATTA CTCTGGGTGA
  Y
  TGCAGAATTT CTAGAGAAGC TGAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37667299	NES09035294	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28286862					SNP	T	T	T	C	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667299	NES09035294	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113879599 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Rr562816	regulatory region 562816	1309 bp distal
Tssr600	transcription start site region 600	1549 bp upstream
Tssr601	transcription start site region 601	1538 bp upstream
Tssr602	transcription start site region 602	1359 bp downstream
Tssr19429	transcription start site region 19429	1821 bp downstream
Tssr19430	transcription start site region 19430	1711 bp downstream
Tssr19431	transcription start site region 19431	1627 bp downstream
Tssr19432	transcription start site region 19432	1544 bp downstream
Tssr19433	transcription start site region 19433	954 bp downstream
Tssr19434	transcription start site region 19434	910 bp downstream
Tssr19435	transcription start site region 19435	51 bp upstream
Tssr19436	transcription start site region 19436	432 bp upstream
Tssr19437	transcription start site region 19437	1167 bp upstream
Tssr19438	transcription start site region 19438	1250 bp upstream
Tssr19439	transcription start site region 19439	1315 bp upstream
Tssr25660	transcription start site region 25660	1800 bp upstream
Tssr25661	transcription start site region 25661	1779 bp upstream
Tssr25662	transcription start site region 25662	1676 bp upstream
Tssr25663	transcription start site region 25663	1650 bp upstream
Tssr25664	transcription start site region 25664	1609 bp upstream
Tssr25665	transcription start site region 25665	1501 bp upstream
Tssr25666	transcription start site region 25666	947 bp upstream
Tssr25667	transcription start site region 25667	904 bp upstream
Tssr25668	transcription start site region 25668	877 bp upstream
Tssr25669	transcription start site region 25669	814 bp upstream
Tssr25670	transcription start site region 25670	83 bp downstream
Tssr25671	transcription start site region 25671	126 bp downstream
Tssr25672	transcription start site region 25672	195 bp downstream
Tssr25673	transcription start site region 25673	230 bp downstream
Tssr25674	transcription start site region 25674	434 bp downstream
Tssr25675	transcription start site region 25675	482 bp downstream
Tssr25676	transcription start site region 25676	519 bp downstream
Tssr25677	transcription start site region 25677	546 bp downstream
Tssr25678	transcription start site region 25678	1218 bp downstream
Tssr25679	transcription start site region 25679	1227 bp downstream
Tssr25680	transcription start site region 25680	1240 bp downstream
Tssr25681	transcription start site region 25681	1287 bp downstream
Tssr25682	transcription start site region 25682	1369 bp downstream
Tssr25683	transcription start site region 25683	1376 bp downstream
Tssr25684	transcription start site region 25684	1467 bp downstream
Tssr25685	transcription start site region 25685	1837 bp downstream