rs28286863 SNP Detail

Summary

• ID
  rs28286863
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113879584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCC ATGCTTCTAA GTGAAATGGG
  Y
  ATTACTCTGG GTGATTGCAG AATTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37667300	NES09035292	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	T	T	C	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28286863					SNP	T	T	C	T	C	T	T	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667300	NES09035292	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113879584 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Tssr600	transcription start site region 600	1534 bp upstream
Tssr601	transcription start site region 601	1523 bp upstream
Tssr602	transcription start site region 602	1374 bp downstream
Tssr19429	transcription start site region 19429	1806 bp downstream
Tssr19430	transcription start site region 19430	1696 bp downstream
Tssr19431	transcription start site region 19431	1612 bp downstream
Tssr19432	transcription start site region 19432	1529 bp downstream
Tssr19433	transcription start site region 19433	939 bp downstream
Tssr19434	transcription start site region 19434	895 bp downstream
Tssr19435	transcription start site region 19435	66 bp upstream
Tssr19436	transcription start site region 19436	447 bp upstream
Tssr19437	transcription start site region 19437	1182 bp upstream
Tssr19438	transcription start site region 19438	1265 bp upstream
Tssr19439	transcription start site region 19439	1330 bp upstream
Tssr25660	transcription start site region 25660	1785 bp upstream
Tssr25661	transcription start site region 25661	1764 bp upstream
Tssr25662	transcription start site region 25662	1661 bp upstream
Tssr25663	transcription start site region 25663	1635 bp upstream
Tssr25664	transcription start site region 25664	1594 bp upstream
Tssr25665	transcription start site region 25665	1486 bp upstream
Tssr25666	transcription start site region 25666	932 bp upstream
Tssr25667	transcription start site region 25667	889 bp upstream
Tssr25668	transcription start site region 25668	862 bp upstream
Tssr25669	transcription start site region 25669	799 bp upstream
Tssr25670	transcription start site region 25670	98 bp downstream
Tssr25671	transcription start site region 25671	141 bp downstream
Tssr25672	transcription start site region 25672	210 bp downstream
Tssr25673	transcription start site region 25673	245 bp downstream
Tssr25674	transcription start site region 25674	449 bp downstream
Tssr25675	transcription start site region 25675	497 bp downstream
Tssr25676	transcription start site region 25676	534 bp downstream
Tssr25677	transcription start site region 25677	561 bp downstream
Tssr25678	transcription start site region 25678	1233 bp downstream
Tssr25679	transcription start site region 25679	1242 bp downstream
Tssr25680	transcription start site region 25680	1255 bp downstream
Tssr25681	transcription start site region 25681	1302 bp downstream
Tssr25682	transcription start site region 25682	1384 bp downstream
Tssr25683	transcription start site region 25683	1391 bp downstream
Tssr25684	transcription start site region 25684	1482 bp downstream
Tssr25685	transcription start site region 25685	1852 bp downstream