rs28286864 SNP Detail

Summary

• ID
  rs28286864
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113879580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCCC TGCCATGCTT CTAAGTGAAA
  Y
  GGGTATTACT CTGGGTGATT GCAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37667301	NES09035290	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28286864					SNP	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667301	NES09035290	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113879580 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Rr562816	regulatory region 562816	1290 bp distal
Tssr600	transcription start site region 600	1530 bp upstream
Tssr601	transcription start site region 601	1519 bp upstream
Tssr602	transcription start site region 602	1378 bp downstream
Tssr19429	transcription start site region 19429	1802 bp downstream
Tssr19430	transcription start site region 19430	1692 bp downstream
Tssr19431	transcription start site region 19431	1608 bp downstream
Tssr19432	transcription start site region 19432	1525 bp downstream
Tssr19433	transcription start site region 19433	935 bp downstream
Tssr19434	transcription start site region 19434	891 bp downstream
Tssr19435	transcription start site region 19435	70 bp upstream
Tssr19436	transcription start site region 19436	451 bp upstream
Tssr19437	transcription start site region 19437	1186 bp upstream
Tssr19438	transcription start site region 19438	1269 bp upstream
Tssr19439	transcription start site region 19439	1334 bp upstream
Tssr25660	transcription start site region 25660	1781 bp upstream
Tssr25661	transcription start site region 25661	1760 bp upstream
Tssr25662	transcription start site region 25662	1657 bp upstream
Tssr25663	transcription start site region 25663	1631 bp upstream
Tssr25664	transcription start site region 25664	1590 bp upstream
Tssr25665	transcription start site region 25665	1482 bp upstream
Tssr25666	transcription start site region 25666	928 bp upstream
Tssr25667	transcription start site region 25667	885 bp upstream
Tssr25668	transcription start site region 25668	858 bp upstream
Tssr25669	transcription start site region 25669	795 bp upstream
Tssr25670	transcription start site region 25670	102 bp downstream
Tssr25671	transcription start site region 25671	145 bp downstream
Tssr25672	transcription start site region 25672	214 bp downstream
Tssr25673	transcription start site region 25673	249 bp downstream
Tssr25674	transcription start site region 25674	453 bp downstream
Tssr25675	transcription start site region 25675	501 bp downstream
Tssr25676	transcription start site region 25676	538 bp downstream
Tssr25677	transcription start site region 25677	565 bp downstream
Tssr25678	transcription start site region 25678	1237 bp downstream
Tssr25679	transcription start site region 25679	1246 bp downstream
Tssr25680	transcription start site region 25680	1259 bp downstream
Tssr25681	transcription start site region 25681	1306 bp downstream
Tssr25682	transcription start site region 25682	1388 bp downstream
Tssr25683	transcription start site region 25683	1395 bp downstream
Tssr25684	transcription start site region 25684	1486 bp downstream
Tssr25685	transcription start site region 25685	1856 bp downstream