rs28286866 SNP Detail

Summary

• ID
  rs28286866
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113879463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGA GGTAAACTCG GTGTAACAGC
  Y
  TCATTTTTCA CTAGAGCGCC TTGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37667303	NES09035285	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	T	C	C	C	T	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28286866					SNP	C	C	T	C	T	C	C	C	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667303	NES09035285	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113879463 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Rr562816	regulatory region 562816	1173 bp distal
Tssr600	transcription start site region 600	1413 bp upstream
Tssr601	transcription start site region 601	1402 bp upstream
Tssr602	transcription start site region 602	1495 bp downstream
Tssr19429	transcription start site region 19429	1685 bp downstream
Tssr19430	transcription start site region 19430	1575 bp downstream
Tssr19431	transcription start site region 19431	1491 bp downstream
Tssr19432	transcription start site region 19432	1408 bp downstream
Tssr19433	transcription start site region 19433	818 bp downstream
Tssr19434	transcription start site region 19434	774 bp downstream
Tssr19435	transcription start site region 19435	187 bp upstream
Tssr19436	transcription start site region 19436	568 bp upstream
Tssr19437	transcription start site region 19437	1303 bp upstream
Tssr19438	transcription start site region 19438	1386 bp upstream
Tssr19439	transcription start site region 19439	1451 bp upstream
Tssr25660	transcription start site region 25660	1664 bp upstream
Tssr25661	transcription start site region 25661	1643 bp upstream
Tssr25662	transcription start site region 25662	1540 bp upstream
Tssr25663	transcription start site region 25663	1514 bp upstream
Tssr25664	transcription start site region 25664	1473 bp upstream
Tssr25665	transcription start site region 25665	1365 bp upstream
Tssr25666	transcription start site region 25666	811 bp upstream
Tssr25667	transcription start site region 25667	768 bp upstream
Tssr25668	transcription start site region 25668	741 bp upstream
Tssr25669	transcription start site region 25669	678 bp upstream
Tssr25670	transcription start site region 25670	219 bp downstream
Tssr25671	transcription start site region 25671	262 bp downstream
Tssr25672	transcription start site region 25672	331 bp downstream
Tssr25673	transcription start site region 25673	366 bp downstream
Tssr25674	transcription start site region 25674	570 bp downstream
Tssr25675	transcription start site region 25675	618 bp downstream
Tssr25676	transcription start site region 25676	655 bp downstream
Tssr25677	transcription start site region 25677	682 bp downstream
Tssr25678	transcription start site region 25678	1354 bp downstream
Tssr25679	transcription start site region 25679	1363 bp downstream
Tssr25680	transcription start site region 25680	1376 bp downstream
Tssr25681	transcription start site region 25681	1423 bp downstream
Tssr25682	transcription start site region 25682	1505 bp downstream
Tssr25683	transcription start site region 25683	1512 bp downstream
Tssr25684	transcription start site region 25684	1603 bp downstream
Tssr25685	transcription start site region 25685	1973 bp downstream