rs28286867 SNP Detail

Summary

• ID
  rs28286867
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113879350 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATGG TAACTGACTT AAGTCTAGTC
  Y
  ATCAATAATG GAACTTATTA GAATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37667304	NES09035282	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		C	C		C		C	C	C		T
ss45350907	mCV22515944	ABI	CRAMUS_MOUSE	f	SNP	T	T	C					T	C
ss147245819	ENSMUSSNP177541	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C				C
ss320462302	CHEV_2_113874605	CHEVERUD	SCREENING_POP	f	SNP											T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28286867					SNP	T	T	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667304	NES09035282	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113879350 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Tssr600	transcription start site region 600	1300 bp upstream
Tssr601	transcription start site region 601	1289 bp upstream
Tssr602	transcription start site region 602	1608 bp downstream
Tssr19429	transcription start site region 19429	1572 bp downstream
Tssr19430	transcription start site region 19430	1462 bp downstream
Tssr19431	transcription start site region 19431	1378 bp downstream
Tssr19432	transcription start site region 19432	1295 bp downstream
Tssr19433	transcription start site region 19433	705 bp downstream
Tssr19434	transcription start site region 19434	661 bp downstream
Tssr19435	transcription start site region 19435	300 bp upstream
Tssr19436	transcription start site region 19436	681 bp upstream
Tssr19437	transcription start site region 19437	1416 bp upstream
Tssr19438	transcription start site region 19438	1499 bp upstream
Tssr19439	transcription start site region 19439	1564 bp upstream
Tssr25660	transcription start site region 25660	1551 bp upstream
Tssr25661	transcription start site region 25661	1530 bp upstream
Tssr25662	transcription start site region 25662	1427 bp upstream
Tssr25663	transcription start site region 25663	1401 bp upstream
Tssr25664	transcription start site region 25664	1360 bp upstream
Tssr25665	transcription start site region 25665	1252 bp upstream
Tssr25666	transcription start site region 25666	698 bp upstream
Tssr25667	transcription start site region 25667	655 bp upstream
Tssr25668	transcription start site region 25668	628 bp upstream
Tssr25669	transcription start site region 25669	565 bp upstream
Tssr25670	transcription start site region 25670	332 bp downstream
Tssr25671	transcription start site region 25671	375 bp downstream
Tssr25672	transcription start site region 25672	444 bp downstream
Tssr25673	transcription start site region 25673	479 bp downstream
Tssr25674	transcription start site region 25674	683 bp downstream
Tssr25675	transcription start site region 25675	731 bp downstream
Tssr25676	transcription start site region 25676	768 bp downstream
Tssr25677	transcription start site region 25677	795 bp downstream
Tssr25678	transcription start site region 25678	1467 bp downstream
Tssr25679	transcription start site region 25679	1476 bp downstream
Tssr25680	transcription start site region 25680	1489 bp downstream
Tssr25681	transcription start site region 25681	1536 bp downstream
Tssr25682	transcription start site region 25682	1618 bp downstream
Tssr25683	transcription start site region 25683	1625 bp downstream
Tssr25684	transcription start site region 25684	1716 bp downstream