rs28286983 SNP Detail

Summary

• ID
  rs28286983
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:110561973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTA CAGGTCTCCG AACATTCCAA
  Y
  TCTACAAATT CCCCATCACC AGAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss37675113	NES09059831	PERLEGEN	MM_PANEL2	f	SNP	C			T	C	C		T	C	T
ss147213906	ENSMUSSNP2965044	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss320457481	CHEV_2_110571785	CHEVERUD	SCREENING_POP	f	SNP							T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs28286983					SNP	C	C	C	T	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37675113	NES09059831	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:110561973 () rs orientation: forward

Symbol	Name	Function Class
Ano3	anoctamin 3	within coordinates
Muc15	mucin 15	within coordinates
Tssr19336	transcription start site region 19336	67 bp downstream
Tssr19337	transcription start site region 19337	27 bp downstream
Tssr19338	transcription start site region 19338	88 bp upstream