rs28286985 SNP Detail

Summary

• ID
  rs28286985
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:110561625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTG TTCATTTCAT TACCATTTGC
  R
  AGGCCTCAGA AACAAAATCC ACGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss37675115	NES09059827	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	G	A	A	A		G	A	A
ss147213885	ENSMUSSNP6313268	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A			A
ss320457477	CHEV_2_110571437	CHEVERUD	SCREENING_POP	f	SNP									G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs28286985					SNP	A	A	A	A	G	A	A	A	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37675115	NES09059827	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:110561625 () rs orientation: forward

Symbol	Name	Function Class
Ano3	anoctamin 3	within coordinates
Muc15	mucin 15	within coordinates
Tssr19336	transcription start site region 19336	270 bp upstream
Tssr19337	transcription start site region 19337	312 bp upstream
Tssr19338	transcription start site region 19338	436 bp upstream