rs28286986 SNP Detail

Summary

• ID
  rs28286986
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:110560087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTAT GAGTTAGGGA ACTCACACAC
  Y
  TAAGCAAAAT GATGTACTTG GGTTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss37675116	NES09059874	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T		C	T	C
ss320457463	CHEV_2_110569899	CHEVERUD	SCREENING_POP	f	SNP						C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs28286986					SNP	T	C	T	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37675116	NES09059874	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:110560087 () rs orientation: forward

Symbol	Name	Function Class
Ano3	anoctamin 3	within coordinates
Muc15	mucin 15	within coordinates
Tssr19336	transcription start site region 19336	1808 bp upstream
Tssr19337	transcription start site region 19337	1850 bp upstream
Tssr19338	transcription start site region 19338	1974 bp upstream