rs28291540 SNP Detail

Summary

• ID
  rs28291540
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:140545833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACACTGCCT GAAGCCCCCA GGCCTGGAGA AGCACATTGC
  AGGCCAGTGG CTCTGACAGG AGTAGGTTGG GGAAAGAGAA AGGCCAGTCA CTGAGGGGCT
  K
  CCTCCAGCTG CAGAGAAGAC CTGGCGAAGA CTCAGAAATA CTGGGGAAAG GCCCCAGGGC
  TCCTCACAGC GCCCAATGCT GACCTCCCAC ACTGTGTGAC                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37788171	NES09140054	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28291540					SNP	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37788171	NES09140054	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140545833 () rs orientation: forward

Symbol	Name	Function Class
Gm13032	predicted gene 13032	1011 bp downstream
Padi1	peptidyl arginine deiminase, type I	Intron
Rr603557	regulatory region 603557	1428 bp distal
Rr603558	regulatory region 603558	926 bp distal